A Shopify Merchant’s Guide to Invoices & Receivables.

October 1, 2026

Running a Shopify store involves much more than attracting customers and processing orders. As your business grows, administrative responsibilities also increase. You may need to generate invoices, answer customer requests, monitor payment status, follow up on overdue balances, and maintain accurate financial records—all while managing products, fulfillment, marketing, and customer service.

For many Shopify store owners, the challenge is not creating one invoice. The challenge is knowing what happens after the invoice is sent.

Has the customer paid? Which invoices are still outstanding? Who needs a reminder? Which wholesale customer has exceeded their payment terms? And most importantly: who owes your business money?

Invoice Hero helps Shopify merchants manage this process more efficiently. It combines professional PDF invoice generation with payment reminders, invoice tracking, payment links, and accounts receivable tools designed for growing Shopify businesses.

Why invoicing becomes difficult as your store grows

When a Shopify store is new, the owner may be able to monitor every order manually. Invoices can be created one at a time, payment details can be checked individually, and customer follow-ups may be handled from a personal inbox.

This approach becomes difficult as order volume increases.

You may be managing:

  • Daily online orders.
  • Shopify POS transactions.
  • Wholesale or B2B customers.
  • Draft orders and pre-payment invoices.
  • Customers with payment terms.
  • Refunds, partial payments, and overdue balances.
  • Multiple currencies, tax requirements, and shipping details.
  • Requests for branded or downloadable PDF invoices.

Manual invoicing takes time and can lead to inconsistent customer communication. A missed invoice or delayed payment reminder can also affect your cash flow.

For a growing Shopify store, invoicing should be connected to the order workflow—not treated as a separate administrative task.

Create professional Shopify PDF invoices

A Shopify invoice is more than a receipt. It can serve as a formal record of the transaction and provide customers with the information they need for payment, accounting, tax reporting, or internal approval.

Invoice Hero enables Shopify store owners to automatically or manually generate professional PDF invoices for their orders. Merchants can customize invoice designs with their logo, colors, fonts, and business details to create a consistent brand experience.

Invoices can include important information such as:

  • Customer and billing details.
  • Product names and quantities.
  • Prices, discounts, and taxes.
  • Payment terms and due dates.
  • Purchase order numbers.
  • Tracking numbers.
  • Custom invoice numbers.
  • Payment links.
  • Order and transaction information.

For stores selling internationally, multi-language and multi-currency support can make invoices easier for customers to understand and process.

Save time on recurring invoice tasks

Store owners often spend valuable time completing repetitive tasks:

  • Opening each order.
  • Creating an invoice.
  • Downloading the PDF.
  • Attaching it to an email.
  • Sending the message to the customer.
  • Updating a spreadsheet.
  • Checking later whether payment has arrived.

Invoice Hero helps reduce this manual workload by allowing merchants to send invoices automatically for new orders or trigger them manually when required. Store owners can also download or print invoices in bulk, which is useful for larger order volumes, fulfilment teams, or offline record keeping.

Invoices can also be generated from the Shopify admin orders page, helping merchants work within the systems they already use.

Keep track of unpaid and outstanding invoices

A growing store needs more than an invoice generator. It needs a clear view of its outstanding receivables.

Accounts receivable refers to the money customers owe your business for products or services already provided. For Shopify merchants, this may include unpaid wholesale orders, draft-order invoices, credit sales, or customers purchasing under agreed payment terms.

Without proper tracking, it can be difficult to answer:

  • Which customers have unpaid invoices?
  • How much money is currently outstanding?
  • Which invoices are approaching their due date?
  • Which invoices have already become overdue?
  • Does a customer have several open invoices?
  • Which payments require immediate follow-up?

Invoice Hero’s payment tracking and accounts receivable tools help store owners monitor invoice status more efficiently. This gives merchants a clearer view of expected payments and reduces the need to search through individual Shopify orders or disconnected spreadsheets.

Use payment terms for Shopify B2B sales

Retail customers generally pay at checkout. B2B customers may follow a different process. They may request an invoice, purchase products on credit, or pay according to agreed terms such as Net 15 or Net 30.

For example, a wholesale customer may place an order in the first week of the month and make payment within 30 days. If the due date is not clearly documented, payment can be delayed or overlooked.

Shopify payment terms should be displayed clearly on the invoice. This may include:

  • Invoice issue date.
  • Payment due date.
  • Net payment terms.
  • Purchase order number.
  • Accepted payment methods.
  • Late-payment instructions.
  • A direct payment link.

Clear information helps the customer’s accounts team process the invoice correctly and gives the store owner a reliable reference point for follow-up.

Send automatic Shopify payment reminders

Customers do not always delay payment intentionally. An invoice may be missed, sent to the wrong department, or waiting for internal approval.

Automatic invoice payment reminders help store owners follow up consistently without writing every message manually. A practical reminder sequence may include:

  1. An invoice email when the order or invoice is created.
  2. A reminder before the payment due date.
  3. A follow-up when the invoice becomes overdue.
  4. Additional reminders for older outstanding balances.

This process helps prevent unpaid invoices from becoming forgotten invoices. It also allows store owners to maintain a professional tone while improving payment consistency.

For B2B businesses, reminders can include the invoice amount, due date, payment link, and a clear request for an expected payment date.

Manage overdue invoices and collections professionally

When an invoice becomes overdue, the next step should be organised rather than reactive.

Store owners can prioritise overdue invoices based on:

  • How long the invoice has been overdue.
  • The value of the outstanding balance.
  • The customer’s previous payment history.
  • The number of unpaid invoices.
  • The importance of the customer relationship.
  • Whether the customer has responded to previous reminders.

A polite first reminder can assume that the customer missed the due date. A later message can be more direct and include a copy of the invoice, payment instructions, and a request for a confirmed payment date.

Including a Shopify payment link can reduce friction by allowing the customer to pay directly from the invoice or reminder.

Create a more reliable Shopify workflow

For Shopify store owners, the complete payment workflow can be structured as:

‍

This workflow is particularly useful for:

  • Wholesale Shopify stores.
  • B2B merchants.
  • Stores offering Net 30 payment terms.
  • Businesses that sell through Shopify POS and online channels.
  • Stores processing high order volumes.
  • International merchants with tax and currency requirements.
  • Teams that need standardised invoicing processes.

Invoice Hero helps bring these activities together in one Shopify-focused workflow. It supports automatic PDF invoices, customizable designs, payment links, order printing, payment reminders, and accounts receivable management. The Shopify App Store listing also identifies support for Shopify POS, Shopify Flow, customer accounts, multi-currency, multi-language invoices, payment terms, due dates, and invoice tracking.

Know who owes your Shopify store money

A successful Shopify store needs more than sales. It needs healthy cash flow and reliable payment processes.

By connecting invoice generation with payment terms, reminders, tracking, and collections, store owners can spend less time on repetitive administrative work and gain better visibility into outstanding revenue.

Invoice Hero helps answer the question every growing merchant eventually needs to answer:

Who owes my Shopify store money, how much do they owe, and what should I do next?

With a structured invoicing and accounts receivable workflow, Shopify store owners can improve customer communication, reduce missed follow-ups, and manage payments with greater confidence.

Ready to simplify invoicing and payment tracking for your Shopify store? Explore Invoice Hero and build a more efficient workflow from order to payment.‍

‍

‍

6,000+ Global Shopify Brands

Quickly and easily setup your professional invoice generation workflow, and save time!
Trusted By

6,000+ Global Shopify Brands

Quickly and easily setup your professional invoice generation workflow, and save time!
View in Shopify App Store